Wednesday, March 20, 2013

the Tao of Programming: Book 5 - Maintenance

Geoffrey James, 1987
Book 5 - Maintenance

Thus spake the master programmer:
"Though a program be but three lines long, someday it will have to be maintained."

5.1

A well-used door needs no oil on its hinges.
A swift-flowing stream does not grow stagnant.
Neither sound nor thoughts can travel through a vacuum.
Software rots if not used.


These are great mysteries.

5.2

A manager asked a programmer how long it would take him to finish the program on which he was working. "It will be finished tomorrow", the programmer promptly replied.

"I think you are being unrealistic", said the manager, "Truthfully, how long will it take?"

The programmer thought for a moment. "I have some features that I wish to add. This will take at least two weeks", he finally said.

"Even that is too much to expect", insisted the manager, "I will be satisfied if you simply tell me when the program is complete."
The programmer agreed to this.

Several years later, the manager retired. On the way to his retirement luncheon, he discovered the programmer asleep at his terminal. He had been programming all night.

5.3

A novice programmer was once assigned to code a simple financial package.

The novice worked furiously for many days, but when his master reviewed his program, he discovered that it contained a screen editor, a set of generalized graphics routines, an artificial intelligence interface, but not the slightest mention of anything financial.

When the master asked about this, the novice became indignant. "Don't be so impatient", he said, "I'll put in the financial stuff eventually."

5.4

Does a good farmer neglect a crop he has planted?
Does a good teacher overlook even the most humble student?
Does a good father allow a single child to starve?
Does a good programmer refuse to maintain his code?

Tuesday, March 19, 2013

selfless Tao, divided Tao

© Igor Morski
The Abhidharma analysis shows the emergent formation of direct experience to the consciousness without the ground of an Ego-Self. The authors pose the question in the light of the Marvin Misnky e Ray Jackendoff models, which explicitly discuss the idea of a central agent or Self in the mind:

Selfless Minds; Divided Agents
From a contemporary standpoint, then, Abhidharma appears as the study of the emergent formation of direct experience without the ground of an ego-self. It is remarkable how well the overall logical form of some Abhidharma formulations fits that of contemporary scientific concern with emergent properties and societies of mind. (Or perhaps we should state it the other way round.) These latter contemporary scientific concerns have, however, been pursued independently of any disciplined analysis and direct examination of human experience. Since the reader may still be skeptical that science and human experience are inseparable partners, we will now tum to consider in more detail what happens when this partnership is one sided. What happens when the insight that mind is free of self is generated from within the very heart of science and yet is not connected to the rest of human experience?
We have seen how a view of selfless minds begins to take form with the cognitivist separation of consciousness and intentionality. We then saw how cognition can be studied as an emergent phenomenon in self-organizing, distributed networks. In this chapter, we have seen the usefulness of a mixed, "society" mode of description for cognitive processes and human experience. Of what use, then, is the idea of a central agent or self?


















Most working cognitive scientists, and even some cognitivist philosophers, are content to ignore this question. One of the virtues of both Minsky's Society of Mind and Jackendoff's Consciousness and the Computational Mind is that each recognizes this question quite early on and takes it as a central theme. Minsky in particular distinguishes between the lowercase self, which refers "in a general sense to an entire person," and the uppercase Self, which refers to "that more mysterious sense of personal identity." He then asks, "Is this concept of a Self of any real use at all?" And he answers, "It is indeed-provided that we think of it not as a centralized and all-powerful entity, but as a society of ideas that include both our images of what the mind is and our ideals about what it ought to be."
The distinctions that Minsky draws in these remarks are suggestive, especially in the context of our discussion. They are close to the Buddhist distinction between the coherent pattern of dependently originated habits that we recognize as a person and the ego-self that a person may believe she has and constantly grasps after but which does not actually exist. That is, the word self is a convenient way of referring to a series of mental and bodily events and formations, that have a degree of causal coherence and integrity through time. And the capitalized Self does exemplify our sense that hidden in these transitory formations is a real, unchanging essence that is the source of our identity and that we must protect. But as we have seen, this latter conviction may be unfounded and, as Minsky insight fully notes, can actually be harmful.
But equally interesting are the ways in which Minsky's distinctions - or those of other cognitive scientists concerned with the same issue, such as Jackendoff - do not match those of the Buddhist tradition. We believe that the lack of fit is ultimately rooted in two related issues. First, contemporary cognitive science does not distinguish between the idea or representation of a Self and the actual basis of that representation, which is an individual's grasping after an egoself. Cognitive science has challenged the idea that there is a real thing to which the former applies, but it has not even thought to consider the latter. Second, cognitive science does not yet take seriously its own findings of the lack of a Self.
Both of these stem from the lack of a disciplined method for examination and inclusion of human experience in cognitive science. The major result of this lack is the issue that has been with us since the beginning: cognitive science offers us a purely theoretical discovery, which remains remote from actual human experience, of mind without self.
For example Minsky, on the same page from which the previous quotations were taken, writes that "perhaps it's because there are no persons in our heads to make us do the things we want-nor even ones to make us want to want-that we construct the myth that we're inside ourselves." This remark confuses two features of mind without self that we have repeatedly seen to be distinct: one is the lack of an ego-self and the other is grasping for an ego-self. We construct the belief or inner discourse that there is an ego-self not because the mind is ultimately empty of such a self but because the everyday conditioned mind is full of grasping. Or to make the point in the vocabulary of mindfulness/awareness, the belief is rooted in the accumulated tendencies that from moment to moment give rise to the unwholesome mental factors that reinforce grasping and craving. It is not the lack of an ego-self per se that is the source of this ongoing belief and private internal conversation; it is the emotional response to that lack. Since we habitually assume that there is an ego-self, our immediate response is to feel a loss when we cannot inferentially find the object of our convictions. We feel as if we have lost something precious and familiar, and so we immediately try to fill that loss with the belief in a self. But how can we lose something that we (that is, our temporary emergent "wes") never had? And if we never had an ego-self in the first place, what is the point of continually trying to maintain one by telling ourselves we're inside ourselves? If it is to ourselves that we are talking in this conversation, why should we need to tell ourselves all of this in the first place?
This feeling of loss, though somewhat natural when one's investigation is still at an inferential stage, is heightened and prolonged when the discovery of the lack of self remains purely theoretical. In the tradition of a mindful, open-ended examination of experience, the initial conceptual realization of mind without self is deepened to the point where it is realized in a direct, personal way. The realization shifts from being merely inferential to being direct experience through a journey where the actual practice of mindfulness/awareness plays a central role. And as a form of direct experience, generations of meditators attest that the lack of an ego-self does not continue to be experienced as a loss that needs to be supplemented by a new belief or inner dialogue. On the contrary, it is the beginning of a feeling of freedom from fixed beliefs, for it makes apparent precisely the openness and space in which a transformation of what the subject itself is, or could be, becomes possible.
Minsky suggests, however, that we embrace the idea of Self because "so much of what our minds do is hidden from the parts of us that are involved with verbal consciousness." Similarly, Jackendoff suggests that "awareness reflects a curious amalgam of the effects on the mind of both thought and the real world, while leaving totally opaque the means by which these effects come about." There are two problems with this position. In the first place, the hypothesized mental processes of which we are unaware are just that-processes hypothesized by the cognitivist information-processing model of the mind. It is this model that requires a host of subpersonal hidden processes and activities, not our experiences of the mind itself. But surely it is not these ever-changing phantoms of cognitive science that we can blame for our belief that we personally have an ego-self; to think so would be a confusion of levels of discourse. In the second place, even if we did have many mental activities at the subpersonal level inherently hidden from awareness, how would that explain our belief in an ego-self? A glance at the complexity of Jackendoff’s and Minsky's models of the mind suggests that were a mind actually to have all of these mechanisms, awareness of them would not necessarily even be desirable. Lack of awareness is not in itself a problem. What is a problem is the lack of discrimination and mindfulness of the habitual tendency to grasp, of which we can become aware. This type of mindfulness can be developed with great precision due to the fundamentally discontinuous - and hence unsolid-nature of our experience. (We have seen how some of this discontinuity and lack of solidity is quite consonant with modem cognitive science, and we are now even able to observe some of it from a neurophysiological standpoint.) The cultivation of such precision is possible not just in formal periods of practice but in our everyday lives. An entire tradition with numerous cultural variants and accessible methods testifies to the possibility and actuality of this human journey of investigation and experience.
As we can see from our discussion of both Minsky and Jackendoff, cognitive science basically ignores this possibility. This indifferent attitude generates two significant problems. First, by means of this ignoring, cognitive science denies itself the investigation of an entire domain of human experience. Even though the "plasticity" of experience, especially in its perceptual forms, has become something of a topic of debate among philosophers and cognitive scientists, no one is investigating the ways in which conscious awareness can be transformed as a result of practices such as mindfulness/awareness. In the mindfulness/awareness tradition, in contrast, the possibility of such transformation is the cornerstone of the entire study of mind.
The second problem is the one we have evoked from the very beginning of this book: science becomes remote from human experience and, in the case of cognitive science, generates a divided stance in which we are led to affirm consequences that we appear to be constitutionally incapable of accepting. Explicit attempts to heal this gap are broached only by a few, such as Gordon Globus, who asks the question, What is a neural network that it may be capable of supporting a Dasein, an embodied existence? or Sherry Turkle, who has explored a possible bridge between cognitive science and psychoanalysis. And yet, to the extent that research in cognitive science requires more and more that we revise our naive idea of what a cognizing subject is (its lack of solidity, its divided dynamics, and its generation from unconscious processes), the need for a bridge between cognitive science and an open-ended pragmatic approach to human experience will become only more inevitable. Indeed, cognitive science will be able to resist the need for such a bridge only by adopting an attitude that is inconsistent with its own theories and discoveries.
The deep problem, then, with the merely theoretical discovery of mind without self in as powerful and technical a context as late twentieth-century science is that it is almost impossible to avoid embracing some form of nihilism. If science continues to manipulate things without embracing a progresssive appreciation of how we live among those things, then the discovery of mind without self will have no life outside the laboratory, despite the fact that the mind in that laboratory is the very same mind without self. This mind discovers its own lack of a personal ground-a deep and remarkable discovery and yet has no means to embody that realization. Without such embodiment, we have little choice but to deny the self altogether, without giving up for one moment our habitual craving for what has just been denied us.
By nihilism we mean to refer precisely to Nietzsche's definition: "Radical nihilism is the conviction of an absolute untenability of existence when it comes to the highest values that one recognizes." In other words, the nihilistic predicament is the situation in which we know that our most cherished values are untenable, and yet we seem incapable of giving them up.
This nihilistic predicament emerges quite clearly in both Jackendoff's and Minsky's books. As we mentioned, Jackendoff claims, on the one hand, that "consciousness is not good for anything," and then, on the other hand, that consciousness is "too important for one's life-too much fun-to conceive of it as useless." Thus for Jackendoff belief in the causal efficacy of consciousness is untenable, and yet he-like the rest of us-is incapable of giving it up.
A similar predicament emerges at the end of Minsky's book. On the last pages of his Society of Mind, Minsky examines the notion of free will, which he calls "the myth of the third alternative" between determinism and chance. Science tells us that all processes are determined or depend in part on chance. There is no room, therefore, for some mysterious third possibility called a "free will," by which Minsky means "an Ego, Self, or Final Center of Control, from which we choose what we shall do at every fork in the road of time." What, then, is Minsky's response to this predicament? The final paragraph of his second-to-last page is worth quoting in full:
No matter that the physical world provides no room for freedom of the will: that concept is essential to our model of the mental realm. Too much of our psychology is based on it for us to ever give it up. We're virtually forced to maintain that belief, even though we know it's false-except, of course when we're inspired to find the flaws in all our beliefs, whatever may be the consequence to cheerfulness and mental peace.
At the moment, it is the feeling tone of Minsky's dilemma that concerns us. Although he ends The Society of Mind a page later with the more upbeat thought that "whenever anything goes wrong there are always other realms of thought," the quotation on free will is actually his final vision of the relation between science and human experience. As with Jackendoff, science and human experience come apart, and there is no way to put them together again. Such a situation exemplifies perfectly Nietzsche's hundred-year-old diagnosis of our cultural predicament. (The remark of Nietzsche's we quoted is dated 1887.) We are forced - condemned-to believe in something we know can't be true.
We are going to such great lengths to discuss both Minsky's and Jackendoff's work because each clearly presents, in its own way, the predicament we all face. Indeed, Minsky and Jackendoff have done us the great service of not shying away from the situation, as do other scientists and philosophers who imagine that there are secret recesses within the brain that hide an existing self or who suppose that probability and uncertainty at the quantum level provide a home for free will.
Nevertheless, the issues as discussed by Minsky and Jackendoff are rather starkly met. Both are saying that there is an unbridgeable contradiction between cognitive science and human experience. Cognitive science tells us that we do not have a Self that is efficacious and free. We cannot, however, give up such a belief-we are "virtually forced" to maintain it. The mindfulness/awareness tradition, on the other hand, says that we are most certainly not forced to maintain it. This tradition offers a fourth alternative, a vision of freedom of action that is radically different from our usual conceptions of freedom.
Let us be clear that this is not an issue in the philosophy of free will. (We are resisting, with great effort, the urge to launch into a discussion of physical versus structural determinism, prediction, and many other philosophical reactions to Minsky's and Jackendoff's claims.) What is at issue is that there is a tradition the very heart of which is to examine such issues in experience. Virtually the entire Buddhist path has to do with going beyond emotional grasping to ego. Meditative techniques, traditions of study and contemplation, social action, and the organization of entire communities have been harnessed toward this end. Histories, psychologies, and sociologies have been (and can be) written about it. As we have described several times, human beings do transform themselves (and they certainly do believe that they can transform themselves) progressively in this way. The result, in this world view, is that real freedom comes not from the decisions of an ego-self's “will” but from action without any Self whatsoever.
What cognitive science is saying about selfless minds is important for human experience. Cognitive science speaks with authority in modem society. Yet there is the danger that cognitive scientists will follow Hume's example: having brilliantly formulated the discovery of selfless minds, a discovery of fundamental relevance to the human situation, but conceiving of no way to bring that discovery together with everyday experience, they will have no recourse but to shrug and go off to any modem equivalent of backgammon. We have been attempting to offer instead a bridge back to human experience.

Minding the World
We have spent ... looking for the self, but even when we could not find it, we never doubted the stability of the world. How could we, when it seemed to provide the setting for all of our examinations? And yet when, having discovered the groundlessness of the self, we tum toward the world, we are no longer sure we can find it. Or perhaps we should say that once we let go of a fixed self, we no longer know how to look for the world. We define the world, after all, as that which is not-self, that which is different from the self, but how can we do this when we no longer have a self as a reference point?
Once more, we seem to be losing our· grip on something familiar. Indeed, at this point most people will probably become quite nervous and see the specters of solipsism, subjectivism, and idealism lurking on the horizon, even though we already know that we cannot find a self to serve as the anchor point for such literally self-centered views. We are, perhaps, more attached to the idea that the world has a fixed and ultimate ground than we are to the idea of a personal self. We need, then, to pause and become fully aware of this anxiety that lies underneath the varieties of cognitive and emergent realism.

Monday, March 18, 2013

the song of Tao

Tilopa (988 – 1069) was an indian mahasiddha of Vajrayana Buddhism and developer of the set of spiritual practices of the tibetan tantrism known as Mahamudra.
The Song of Mahamudra, addressed to his disciple Nāropā, expresses what is inexpressible - "beyond all words and symbols" - which represents the supreme understanding, where the subject which knows and the object which is known disappear and only knowledge remains:

Mahamudra is beyond all words and symbols,
but for you Naropa,
earnest and loyal,
must this be said:

The Void needs no reliance,
Mahamudra rest on nought.
Without making an effort,
but remaining loose and natural,
one can break the yoke -
thus gaining liberation.

If one sees naught when staring into space;
if with the mind one then observes the mind,
one destroys distinctions
and reaches buddahood.

The clouds that wander through the sky have no roots,
no home, nor do the distinctive thoughts
floating through the mind.
Once the Self-mind is seen,
discrimination stops.

In space shapes and colours form,
but neither by black nor white is space tinged.
From the Self-mind all things emerge,
the mind by virtues and by vices is not stained.

The darkness of ages
cannot shroud the glowing sun,
the long kalpas of samsara
never can hide the mind’s brilliant light.

Though words are spoken to explain the void,
the void as such can never be expressed.
Though we say “the mind is bright as light”,
it is beyond all words and symbols.
Although the mind is void in essence,
all things it embraces and contains.

Do nought with the body but relax;
shut firm the mouth and silent remain;
empty your mind and think of nought.
Like a hollow bamboo rest at ease with your body.
Giving not nor taking, put your mind at rest.
Mahamudra is like a mind that clings to nought.
Thus practicing, in time you will reach buddhahood.

The practice of mantra and pāramitā,
instruction in the sutras and precepts,
and teaching from the schools and scriptures,
will not bring realization of the innate truth.
For if the mind when filled with some desire
should seek a goal,
it only hides the light.

He who keeps tantric precepts, yet discriminates,
betrays the spirit of samaya.
Cease all activity, abandon all desire,
let thoughts rise and fall
as they will like ocean waves.
He who never harms the non-abiding,
nor the principle of non-distinction,
upholds the tantric precepts.

He who abandons craving
and clings not to this and that,
perceives the real meaning given in the scriptures.

In Mahamudra all one’s sins are burned;
in Mahamudra one is released
from the prison of this world.
This is the dharma’s supreme torch.
Those who disbelieve it are fools,
who ever wallow in misery and sorrow.

To strive for liberation
one should rely on a guru.
When our mind receives his blessings
emancipation is at hand.

Alas,all things in the world are meaningless,
they are but sorrow’s seeds.
Small teachings lead to acts -
one should only follow teachings that are great.

To transcend duality is the kingly view.
To conquer distractions is the royal practice.
The path of no-practice is the way of all the buddhas.
He who treads that path reaches buddhahood.

Transient is this world,
like phantoms and dreams, substance it has none.
Renounce it and forsake your kin,
cut the strings of lust and hatred,
and meditate in woods and mountains.

If without effort
you remain loosely in the natural state,
soon Mahamudra you will win
and attain the non-attainment.

Cut the root of a tree and the leaves will wither;
cut the root of your mind and samsara falls.
The light of any lamp dispels in a moment
the darkness of long kalpas;
the strong light of the Mind in but a flash
will burn the veil of ignorance.

Who ever clings to the mind
sees not the truth of what is beyond the mind.
Whoever strives to practice dharma
finds not the truth of beyond-practice.
To know what is beyond both mind and practice
one should cut cleanly through the root of the mind
and stare naked.
One should thus break away from all distinctions
and remain at ease.

One should not give or take,
but remain natural - for Mahamudra
is beyond all acceptance and rejection.
Since Alaya is not born,
no one can obstruct or soil it;
staying in the unborn realm
all appearance will dissolve into dharmata,
and self-will and pride will vanish into nought.

The Supreme Understanding
transcends all this and that;
The supreme action
embraces great resourcefulness without attachment.
The supreme accomplishment
is to realize immanence without hope.

At first a yogi feels his mind
is tumbling like a waterfall,
in mid-course, like the Ganges,
it flows on slow and gentle;
in the end it is a great vast ocean
where the lights of son and mother merge in one.


The experience of the ultimate is not an experience at all – because the experiencer is lost. And when there is no experiencer, what can be said about it? Who will say it? Who will relate the experience? When there is no subject, the object also disappears – the banks disappear, only the river of experience remains. Knowledge is there, but the knower is not.

That has been the problem for all the mystics. They reach to the ultimate, but they cannot relate it to those who are following. They cannot relate it to others who would like to have an intellectual understanding. They have become one with it. Their whole being relates it, but no intellectual communication is possible. They can give it to you if you are ready to receive; they can allow it to happen in you if you also allow it, if you are receptive and open. But words won’t do, symbols won’t help; theories and doctrines are of no use at all.

The experience is such that it is more like an experiencing than like an experience. It is a process – and it begins, but it never ends. You enter into it, but you never possess it. It is like a drop dropping in the ocean, or, the ocean itself dropping into the drop. It is a deep merger, it is oneness, you simply melt away into it. Nothing is left behind, not even a trace, so who will communicate? Who will come back to the world of the valley? Who will come back to this dark night to tell you?

All the mystics all over the world have always felt impotent as far as communication is concerned. Communion is possible, but communication, no. This has to be understood from the very beginning. A communion is a totally different dimension: two hearts meet, it is a love affair. Communication is from head to head; communion is from heart to heart, communion is a feeling. Communication is knowledge: only words are given, only words are said, and only words are taken and understood. And words are such: the very nature of words is so dead that nothing alive can be related through them. Even in ordinary life, leave aside the ultimate, even in ordinary experiencing when you have a peak moment, an ecstatic moment, when you really feel something and become something, it becomes impossible to relate it in words.

Friday, March 15, 2013

every ghost in Tao is magic


Though I've tried before to tell her
Of the feelings I have for her in my heart
Every time that I come near her
I just lose my nerve
As I've done from the start

Every little thing she does is magic
Everything she do just turns me on
Even though my life before was tragic
Now I know my love for her goes on

Do I have to tell the story
Of a thousand rainy days since we first met
It's a big enough umbrella
But it's always me that ends up getting wet

Every little thing she does is magic
Everything she do just turns me on
Even though my life before was tragic
Now I know my love for her goes on

I resolve to call her up a thousand times a day
And ask her if she'll marry me in some old fashioned way
But my silent fears have gripped me
Long before I reach the phone
Long before my tongue has tripped me
Must I always be alone?

Every little thing she does is magic
Everything she do just turns me on
Even though my life before was tragic
Now I know my love for her goes on

Thursday, March 14, 2013

holarchies meta-Tao

The next metapattern studied by Tyler Volk and Jeff Bloom are Holarchies, a word coined by Arthur Koestler in The Ghost in the Machine, from a combination of the greek words "holos", meaning "whole", and "hierarchy". It is a hierarchically organized structure of units or entities that are called 'Holons' and "Clonons", elements which are both parts of a system and "wholes", useful to describe highly complex systems. A system or organization which has in its structure (or meta-structure) some holarchies it is also called holonomic or holonic.


Background

A holarchy is a nested system of layers in which the units (wholes) within one layer are parts for the wholes in the next larger, encompassing layer. Holarchic layers can be used to describe certain types of social, political, and institutional organizations, as well as structures in science and other disciplines. In holarchies the wholes at each level have particular kinds of relationships with the other wholes on that same level, and these relationships change as we move up the nested layers from physics to organisms to social systems. The relationships between layers in holarchies tend to be ambiguous and more difficult to describe.

Examples

  • In science: rose flowers, the Earth and atmosphere, atoms, bodies of organisms, holarchic layers of complexity in organisms (from DNA/RNA components to the whole), solar system, galaxies, etc.
  • In architecture and design: some building and community designs, etc.
  • In art: forms as depicted, etc.
  • In social sciences: communities (as described by Jean Lave and Etienne Wenger), many tribal societies, democracy in its purest form, etc.
  • In other senses: mandalas, apprenticeships, etc.
A classical example of holarchy is the hierarchy of levels of entities which compose an ecosystem:
© copyright 2012 Marshall Clemens - Idiagram
The hierarchical structure of natural sciences and of knowledge domains is more precisely an holarchy, since it is a hierarchy but where the elements of the levels are themselves parts for the higher levels and wholes for the lower levels.
Example of holonic organization evolution in holarchic structures increasingly complex.
Example of an holonic organization community represented as a strategic map:
Lawrence Boys and Girls Club

© copyright 2012 Marshall Clemens - Idiagram
Holarchies may be also "abstract", for example a rule holarchy to determine specific results or behaviors. A relevant example are complex adaptive systems, like living systems  (if survived), where the system evolution is determined by an intrinsic holarchy of rules:
Complex adaptive system model. The evolution of the system from initial to final components, from left to right, is ruled by a central rule system organized as holarchy.
© copyright 2012 Marshall Clemens - Idiagram - NECSI

Metapatterns

The Pattern Underground

Tuesday, March 12, 2013

Tao subsystems - I


The system approach of Tart to consciousness and its states analyzes the characteristics and connections of the subsystems used as experiential criteria for its description: exteroception, interoception, input processing, memory, subconscious, valuation and decision-making, emotions, space and time sense, sense of identity and motor output:

Subsystems

We began this discussion of the systems approach to consciousness by describing the concepts of attention/awareness, energy, and structure. We defined a structure as a basic unit that can be assembled into larger structures or be analyzed into substructures. At present, our scientific knowledge is generally too rudimentary to allow the breakdown of structures into their components. We can, however, describe the assembly of multiple structures into major experiential and experimental divisions — subsystems — of consciousness. Ten such subsystems are described in this chapter. They are convenient conceptual tools for understanding the currently known range of variations in d-ASCs. They do not refer to localized regions of the brain. They are concepts I have developed by classifying the greatly varying experiences and behaviors reported in d-ASCs into clusters of phenomena that seem to hold together, on the basis of both their own internal similarity and other known psychological data. In their present form, I find these subsystems a useful conceptual tool for organizing the otherwise chaotic masses of data about d-ASCs. I also believe that further thinking can sharpen our ideas about the properties of these subsystems and their possible interactions with each other and allow us to predict d-ASCs in addition to those already known. Making these predictions and testing them should further sharpen our conceptions about the nature of various subsystems, and so further increase our understanding. This is the standard scientific procedure of conceptualizing the data as well as possible, making predictions on that basis, confirming and disproving various predictions, and thus sharpening the conceptual system or modifying it. The socialized repetition of this procedure is the essence of scientific method.
Figure 8-1 sketches ten major subsystems, represented by the labeled ovals, and their major interaction routes. The solid arrows represent major routes of information flow: not all known routes are shown, as this would clutter the diagram. The hatched arrows represent major, known feedback control routes whereby one subsystem has some control over the functioning of another subsystem. The dashed arrows represent information flow routes from the subconscious subsystem to other subsystems, routes that are inferential from the point of view of the ordinary d-SoC. Most of the subsystems are shown feeding information into, or deriving information from, awareness, which is here considered not a subsystem but the basic component of attention/awareness and attention/awareness energy that flows through various systems. A brief overview of a state of consciousness as a functioning system, as represented in Figure 8-1, can be described as follows. Information from the outside world comes to us through the Exteroception subsystem (classical sense organs), and information from our own bodies comes to us via the Interoception subsystem (kinesthetic and other bodily functioning receptors). Data from both sets of sense organs undergo Input-Processing (filtering, selecting, abstracting), which in turn influences the functioning of Exteroception and Interoception. Input-Processing draws heavily on stored Memory, creates new memories, sends information both directly into awareness and into our subconscious, and stimulates our Sense of Identity and our Emotions. Information we are aware of is in turn affected by our Sense of Identity and Emotions. We subject this information to Evaluation and Decision-Making; and we may act on it, produce some sort of motor output. This Motor Output subsystem produces action in the body that is sensed via Interoception, in a feedback process through the body. The Motor Output also produces effects on the external world that are again sensed by Exteroception, constituting feedback via the external world. Our perception and decision-making are also affected by our Space/Time Sense. Also shown in Figure 8-1 are some latent functions, which may be tapped in a d-ASC, but are not available in the b-SoC. In the following pages the basic nature of each subsystem is defined and the range of both quantitative and qualitative alterations that occur in its functioning over the range of various d-ASCs is indicated. Of necessity, these descriptions are somewhat sketchy. One of the major tasks of future research is to fill in the details about each of these subsystems, their change in d-ASCs, and their interaction with other subsystems.

Exteroception

The subsystem Exteroception includes the classical sense organs for registering changes in the environment: eyes, ears, nose, taste organs, and touch organs. The exteroceptive organs constitute a model of a whole system of consciousness. First, they are active organs. While all of them can respond to stimulation when they are passive, as when a light is suddenly shined in your eye, they normally engage in an active scanning of the environment. Your eyes dart about; you turn your head or perk up your ears to hear sounds more clearly; you reach out to touch things that interest you. Similarly, consciousness can be passively stimulated, but ordinarily it is an active process. Second, each of the classical exteroceptive sense organs has limited responsiveness. The eye cannot respond to ultraviolet light, the ear cannot pick up sounds above or below certain frequencies, touch cannot respond to exceptionally subtle stimuli. Similarly, consciousness can be passively stimulated, but ordinarily it is an active process. Second, each of the classical exteroceptive sense organs has limited responsiveness. The eye cannot respond to ultraviolet light, the ear cannot pick up sounds above or below certain frequencies, touch cannot respond to exceptionally subtle stimuli. Similarly, any state of consciousness has certain limits to what it can and cannot react. Third, you have some voluntary control over the input to your exteroceptive sense organs. If you do not want to see something, you can look away or close your eyes; if you do not want to hear something, you can move away from the sound source or put your fingers in your ears. In any state of consciousness, you have some voluntary control over exteroceptive functioning. But the control is limited: if the sound is intense enough, it is difficult not to hear it at all, even with your hands over your ears. Although many changes in perception of the external environment are reported in d-ASCs, these usually do not represent changes in the exterocepters themselves, except possibly in some drug-induced d-ASCs. Each of the classical sense organs is a masterpiece of engineering; it is already as sensitive as it can be. Thus its useful sensitivity is not increased, even if a person experiences himself as being in more contact with the environment in a d-ASC. AS we shall see later, practically all phenomena dealing with feelings of increased contact with the environment are related to changes in the Input-Processing subsystem. Sometimes when a drug is used to induce a d-ASC there may be some physiological changes in the exterocepters. LSD, for example, may actually cause pupillary dilation, thus allowing in more light (although one might quarrel whether this is a direct physiological effect or a secondary effect due to the increased attention being paid to the external environment). Similarly, since psychedelic drugs affect neural functioning generally, they may have some direct effects on the neural components of the sense organs themselves, but little is known of this now. So, in terms of present knowledge about d-ASCs, changes in the exterocepters seem of little importance. Input to the exterocepters is usually deliberately manipulated and patterned in the course of attempting to induce a d-ASC. Although most of the important changes resulting from these techniques occur in Input-Processing, some do start with direct effects on the exterocepters and should be noted. Input from the environment that, while varying, remains within a learned, anticipated range, acts as a source of loading stabilization. Thus, changing the input to the exteroception may interfere with the loading stabilization function and/or inject anomalous input that may destabilize a d-SoC. A major way of doing this is to reduce or eliminate sensory input. In the induction process for many d-ASCs, there is an attempt to make the environment quiet, to cut down the amount of sensory input a person has to handle. Consider, for example, the techniques of guided imagery or twilight imagery, where, while lying down with closed eyes, a person enters more and more into fantasy. A genuine d-ASC may develop in some cases, as fantasy intensifies, but it is clear the sensory input must usually be kept at a low level to both induce and maintain this d-ASC. I have seen people get into intense experiences through guided imagery techniques, but the simple act of opening the eyes and allowing visual input from the physical world to enter immediately disrupts this state. Reduction of sensory input to a level as near zero as possible is a potent technique for inducing d-ASCs. In the fifties and early sixties, there were many sensory deprivation experiments during which the subject lay comfortably in a dark, quiet room without moving. The findings were interpreted as showing that if the brain did not receive sufficient sensory input, the subject went "crazy." It is now clear that practically all these studies were severely contaminated, as were the contemporary studies of psychedelic drugs, by implicit demand characteristics that account for most of the phenomena produced. If you a person through a procedure he thinks will make him crazy, in a medical setting, he is likely to act crazy. That tells you something about suggestibility, but little about the effects of reduced sensory input per se. Traditional literature from many spiritual psychologies as well as accounts from people who have been trapped in isolation situations, indicate that sensory deprivation can be a powerful technique in affecting consciousness. But its effect is apparently always patterned by other factors. Changing the patterning of input to the exterocepters, and the subsequent processing of the information of Input-Processing, can also be a major way of altering consciousness. When the same kind of input is repeated over and over again, so that the exterocepters become saturated, all sorts of changes take place. For example, if, by means of special apparatus, an image is held absolutely still on the retina of the eye, it soon begins to break up and display all sorts of unusual perceptual changes. Even when we believe we are looking steadily at something, there are actually tiny saccadic movements of the eye that keep the image moving slightly on the retina. Like so many of our receptors, the eye actually responds to slight, continuous change and cannot "see" absolutely steady input. Overloading the exterocepters is another way of inducing d-ASCs. The principle is recognized by people who attend rock concerts. Even if they have not taken some drug to help induce a d-ASC, the light show of complex, changing patterns accompanied by exceptionally loud music overloads and fatigues the exterocepters, blowing their minds.

Interoception

The subsystem Interoception includes the various senses that tell us what is going on inside our bodies — the position of our limbs, the degree of muscle tension, how our limbs are moving, pressure in our intestines, bodily temperature. It is a way of sensing our internal world, as opposed to our external world. Many of the output signals from our interoceptors seems to be permanently excluded from our awareness; many of our sensing systems for governing the function of internal organs seem to have no representation in consciousness, regardless of conditions. For example, the functioning of our kidneys is regulated, but I know of no one who claims to have a direct experiential feel for what his kidneys are doing. We should, however, be careful about setting any ultimate limits on what aspects of Interoception can never reach or be affected by consciousness. The modern technology of biofeedback enables us to focus attention on and to control many bodily processes formerly thought to be completely incapable of voluntary control. Many other interoceptive signals not normally in our awareness can be put in our awareness by turning our attention/awareness to them. For example, you may not have been thinking of sensations in your belly a moment ago, but now that I mention them and your attention/awareness turns there, you can detect various signals. With practice you might become increasingly sensitive to signals from this area of your body. Thus, as with our exterocepters, we have some voluntary control over what we will attend to, but this control is limited. We can also control interoceptive input by doing various things to our bodies. If you have an unpleasant sensation from some part of your body, you can relax, change position, take a deep breath, and change the nature of that signal, presumably by changing whatever is causing it. This is an ability we take for granted and know little about, but it is an important way of affecting interoceptive input. Some techniques for inducing d-ASCs, such as hatha yoga procedures, have a highly sophisticated technology for affecting one's body and how one perceives it. This is the reason biofeedback technology is sometimes said to have the potential to become an "electronic yoga," a way of rapidly learning about various internal conditions and using them to affect consciousness. We are still a long way from attaining this, however. As is the case with exterocepters, there is little evidence that actual physiological changes take place in the interoceptors during various d-ASCs, except possibly in some drug-induced d-ASCs. Also as in Exteroception, the learned, anticipated range of constant input from Interoception acts as a source of loading stabilization for maintaining the ordinary d-SoC. The pattern of input from interoceptors can be subsumed under a useful psychological concept, the body image. You not only have a real body whose actual sensations are picked up by the interoceptors, but, in the course of enculturation, you have learned to perceive your own body in learned, patterned ways, just as you have learned to perceive the external world in socially learned ways. The degree to which your body image corresponds to your actual body may vary considerably. My own observations suggest that people's internal images of their bodies can differ amazingly from what an external observer sees. An individual's body image may be very stable. An intriguing example of this is the phantom limb phenomenon. When an arm or a leg is amputated, the patient almost always reports he can still feel the limb, even though he can see and otherwise intellectually know it is not there. Sensations coming in from the severed nerve tracts are nonconsciously organized in the learned, habitual way so that the patient perceives the limb as still there. Most patients soon lose perception of their phantom limbs as they are subjected to considerable social pressure to do so. In some, however, the phantom limb persists in spite of all attempts to unlearn it. The sensations may or may not be painful. The primary things to note are that the body image can be very rigid and may or may not show much correspondence to the actual body contours and what actually goes on in the body. I am convinced that as Westerners we generally have distorted images of our bodies and poor contact with sensations that go on in them. Since body sensations often represent a thinking about, or data processing of, experience, and a way of expressing emotions, our lack of contact with our actual body sensations puts us out of contact with ourselves. This is considered further in connection with the Subconscious subsystem.

People's experiential reports from d-ASCs indicate that enormous changes can take place in Interoception. The body may seem to get larger or smaller, change in shape, change in internal functioning, change in terms of the relationships of its parts, so that the body may not "work" in the usual fashion. Most of this range of experience probably represents changes in Input-Processing, rather than changes in the interoceptors themselves. As with Exteroception, changing your body image is a common technique for inducing d-ASCs. Reducing interoceptive input, overloading it, or patterning it in novel ways have all been used. The primary effects are on Input-Processing, but the techniques start by affecting the interoceptors themselves. Let us look at some of these techniques briefly. Immobilizing the body in a relaxed position is a major way of causing the output from Interoception to fade and, consequently, causing the body image either to fade or to change, since it is no longer stabilized by actual input from the interoceptors. The discussion of the induction of hypnosis, going to sleep, and meditation mentions the importance of allowing the interoceptors to adapt out so the input from the body disappears. In sensory deprivation techniques it is important to relax the body and at the same time not move at all. Even a slight movement can stimulate large numbers of interceptors and reestablish the body image readily. Overloading interoceptors is an important technique for altering consciousness. A good massage, for instance, or sensory awareness exercises that make you aware of bodily stimuli normally overlooked, have been known to induce d-ASCs. At the opposite end of the continuum from this pleasurable kind of manipulation of Interoception, pain and torture are some of the surest ways of inducing d-ASCs. Patterning interoceptive input in unusual fashions is another way of inducing d-ASCs. Mudras, gestures of symbolic significance used in yoga, consist of putting the body into certain positions. I suspect that the actual bodily posture has a definite patterning effect on interoceptive input and can affect consciousness if you are sensitive to input from your own body, the patterning of interoceptive input may occur, but since not much awareness is gained, posture does not pattern attention/awareness energy in a way that would affect consciousness. Another way of patterning interoceptive input is the altered states of consciousness induction device (ASCID) developed by Masters and Houston on the basis of medieval accounts of the witch's cradle. This is an upright frame into which a person straps himself. the frame is hung from a short rope, so slight motions cause it to rock in erratic patterns. This produces anomalous patterns of input for the occupant to process: some interoceptors tell him he is standing up and therefore needs to exert certain muscular actions to maintain this posture, but other interoceptors tell him he is standing up and therefore needs to exert certain muscular actions to maintain this posture, but other interoceptors tell him he is relaxed and not making these muscular actions. Other interoceptive sense indicate that he is moving and must do things to maintain his balance, but there are in conflict with other interoceptive sensations that he is passive. Since he is not used to such an anomalous, conflicting pattern of stimulation, it can greatly disrupt Input Processing.

Wednesday, March 6, 2013

double Tao helix

Letter

Direct Imaging of DNA Fibers: The Visage of Double Helix


Nanostructures, §Neuroscience and Brain Technologies, and Nanochemistry Departments, Istituto Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy
BIONEM, Bio-Nanotechnology and Engineering for Medicine, Department of experimental and clinical medicine, University of Magna Graecia Viale Europa, Germaneto, 88100 Catanzaro, Italy
IMEM-CNR, Parco Area delle Scienze 37/A, 43124 Parma, Italy

Nano Lett., 2012, 12 (12), pp 6453–6458
Publication Date (Web): November 22, 2012
Copyright © 2012 American Chemical Society

Abstract
Direct imaging becomes important when the knowledge at few/single molecule level is requested and where the diffraction does not allow to get structural and functional information. Here we report on the direct imaging of double stranded (ds) λ-DNA in the A conformation, obtained by combining a novel sample preparation method based on super hydrophobic DNA molecules self-aggregation process with transmission electron microscopy (TEM). The experimental breakthrough is the production of robust and highly ordered paired DNA nanofibers that allowed its direct TEM imaging and the double helix structure revealing.
SEM image of a tightrope of DNA between two silicon nanopillars. marker: 1 μm
TEM direct image of DNA double-helix structure.